...
- Viroids: 95 genomes (95 contigs), 0.03mb.
- Viruses: 27827 genomes (67295 contigs), 939.23mb.
Update: A Two newer database has databases have been uploaded (contents: https://genome-idx.s3.amazonaws.com/kraken/pluspfp_20220908/inspect.txt)
and can be found at:to:
One is taken from Ben Langmeads K2 Index page, the other (plus) is custom built containing all NCBI clades and in addition a selection of interesting gut microbiome species, a mouse genome and representative genomes from the fungi and protozoa clade even if they are not marked as "full genome" or "chromosome". The folders contain .txt files giving a detailed breakdown of the contents.
/gpfs/project/databases/Kraken2-2022-09-28