...
| Codeblock |
|---|
name: py314
channels:
- conda-forge
dependencies:
- python=3.14 |
Note that this requires you to set up conda properly beforehand as described in the Conda article. Alternatively, you can also use pip, again with the proper setup beforehand.
Resource configuration
Just like any other job on the cluster, Snakemake jobs need to be submitted with clearly defined resources in terms of number of nodes, number of CPU cores per node, number of GPUs per node, memory per node and walltime. To ensure optimal use of the cluster for everyone and to make your own jobs run as early as possible, it is important to set these values as tight as possible for each job. The default profile /software/Snakemake/hhu-profile-snakemake9 chooses a single node with one CPU, no GPUs, 1GB of memory and 1hour of walltime. To override these values, you can enter them in the resource section of each rule in your Snakefile. Example:
...