Flye
is a de novo assembler for single molecule sequencing reads
(
https://github.com/fenderglass/Flye
)
SMARTdenovo
is an u
ltra-fast de novo assembler using long noisy reads
(
https://github.com/ruanjue/smartdenovo
)
bwa
- Burrows-Wheeler Alignment Tool for mapping low-divergent sequences against a large reference genome
(
http://bio-bwa.sourceforge.net/
)