Step-by-step guide: How can I download images from OMERO?

Download images in TIFF, OME-TIFF, JPG, or PNG format


  1. Navigate to the images you want to download
  2. Select one or multiple datasets or images
  3. Click on the "Run script" button on the upper right of the screen, close to the search bar  
  4. Go to export_scripts → "Batch Image Export ..."
  5. Enter additional parameters for the export, don't forget to choose the format of the images
  6. Click on Run Script to confirm and generate a zip file.
  7. When the zip file is ready, it will be shown in the Activities Menu (between the "Run script" button and the search bar)
  8. Click on the download file icon     


Download images in their raw format

  1. Navigate to the images you want to download
  2. Select the images that you want to download
  3. In the right panel, click on the "Download Image As" icon
  4. Currently, the "Create Zip" option is not working, but you can download the files individually from the list. We apologize for the inconvenience. Please contact us if you need to download a large number of files.





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