Seitenhistorie

#!/bin/bash
#PBS -l select=1:ncpus=2:mem=3gb:arch="uv2000"
#PBS -l walltime=01:59:00
#PBS -A "HPC-Project"

set -e

module load R

R CMD BATCH --slave R-Script.R R-Output.Rout

#!/bin/bash
#PBS -l select=1:ncpus=2:mem=3gb
#PBS -l walltime=01:59:00
#PBS -A "HPC-Project"
set -e

## Log-File definieren
export LOGFILE=$PBS_O_WORKDIR/$PBS_JOBNAME"."$PBS_JOBID".log"

##Scratch-Laufwerk definieren und erzeugen
SCRATCHDIR=/scratch_gs/$USER/$PBS_JOBID
mkdir -p "$SCRATCHDIR"  

##Information zum Start in das Log-File schreiben
cd $PBS_O_WORKDIR   
echo "$PBS_JOBID ($PBS_JOBNAME) @ `hostname` at `date` in "$RUNDIR" START" > $LOGFILE 
echo "`date +"%d.%m.%Y-%T"`" >> $LOGFILE  

##Software-Umgebung laden
module load R

##Daten vom Arbeitsverzeichnis auf das Scratch-Laufwerk kopieren
cp -r $PBS_O_WORKDIR/* $SCRATCHDIR/. 
cd $SCRATCHDIR 
rm $PBS_JOBNAME"."$PBS_JOBID".log" 

##R-Aufruf
R CMD BATCH --slave R-Script.R R-Output.Rout

##Daten zurück kopieren
cp -r "$SCRATCHDIR"/* $PBS_O_WORKDIR/. 
cd $PBS_O_WORKDIR 

##Verfügbare Informationen zum Auftrag in das Log-File schreiben
echo >> $LOGFILE 
qstat -f $PBS_JOBID >> $LOGFILE   

echo "$PBS_JOBID ($PBS_JOBNAME) @ `hostname` at `date` in "$RUNDIR" END" >> $LOGFILE 
echo "`date +"%d.%m.%Y-%T"`" >> $LOGFILE

#!/bin/bash
#PBS -l select=1:ncpus=2:mem=3gb
#PBS -l walltime=01:59:00
#PBS -A "HPC-Project"

set -e

module load R

R CMD BATCH --slave R-Script1.R R-Output1.Rout &
R CMD BATCH --slave R-Script2.R R-Output2.Rout &

wait

R CMD BATCH --slave R-Script3.R R-Output3.Rout &
R CMD BATCH --slave R-Script4.R R-Output4.Rout &
wait