Seitenhistorie

If activating your conda environment works for you in interactive mode but not in batch mode, then you might need to source your files .bashrc and .bash_profile. This is because in interactive mode you'll get a login shell but in batch mode not. In your jobscript such a solution could look as follows:

#!/bin/bash
#PBS -l select=1:ncpus=X:mem=XGB
#PBS -l walltime=X:00:00
#PBS -A 'XXX'

# source bash
source $HOME/.bashrc
source $HOME/.bash_profile
conda activate SOME_ENV