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Info
titleLatest Information

Currently we have a mirror for Conda to allow you to install packages without internet access. You should specify these local mirrors, when you want to create a new environment


Codeblock
conda create -c http://conda.repo.test.hhu.de/bioconda -c http://conda.repo.test.hhu.de/main -c http://conda.repo.test.hhu.de/conda-forge --override-channels --name my_environment

but also if you want  to install new packages

Codeblock
conda install -c http://conda.repo.test.hhu.de/bioconda -c http://conda.repo.test.hhu.de/main -c http://conda.repo.test.hhu.de/conda-forge --override-channels $PACKAGE_NAME


Codeblock
name: Example
channels:
  - nodefaults
  - http://conda.repo.test.hhu.de/bioconda
  - http://conda.repo.test.hhu.de/main
  - http://conda.repo.test.hhu.de/conda-forge

dependencies:
  - bwa = 0.7.17
  - samtools = 1.10
  - bcftools = 1.10.2

.condarc

To make your life super easy and just ignore all of the above (and thus also keep your existing .yaml files) you can also just create a .condarc file in your home directory with the following contents (this handles the redirection of the channels to the custom hhu ones for you):

Codeblock
custom_channels:
  bioconda: http://conda.repo.test.hhu.de
  conda-forge: http://conda.repo.test.hhu.de

default_channels:
  - http://conda.repo.test.hhu.de/main



Info
titlemodules

There are currently four different conda modules.

For normal usage utilize Miniconda/3. If you want to use conda within snakemake or have other specific needs you can try Miniconda/3_noInit or Miniconda/3_snakemake.

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